Package: SeqAlignR 0.1.1
SeqAlignR: Sequence Alignment and Visualization Tool
Computes the optimal alignment of two character sequences. Visualizes the result of the alignment in a matrix plot. Needleman, Saul B.; Wunsch, Christian D. (1970) "A general method applicable to the search for similarities in the amino acid sequence of two proteins" <doi:10.1016/0022-2836(70)90057-4>.
Authors:
SeqAlignR_0.1.1.tar.gz
SeqAlignR_0.1.1.zip(r-4.7)SeqAlignR_0.1.1.zip(r-4.6)SeqAlignR_0.1.1.zip(r-4.5)
SeqAlignR_0.1.1.tgz(r-4.6-any)SeqAlignR_0.1.1.tgz(r-4.5-any)
SeqAlignR_0.1.1.tar.gz(r-4.7-any)SeqAlignR_0.1.1.tar.gz(r-4.6-any)
SeqAlignR_0.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
SeqAlignR/json (API)
| # Install 'SeqAlignR' in R: |
| install.packages('SeqAlignR', repos = c('https://leonnorblad.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/leonnorblad/seqalignr/issues
Last updated from:054319340c. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | NOTE | 94 | ||
| source / vignettes | OK | 149 | ||
| linux-release-x86_64 | NOTE | 95 | ||
| macos-release-arm64 | NOTE | 129 | ||
| macos-oldrel-arm64 | NOTE | 176 | ||
| windows-devel | NOTE | 82 | ||
| windows-release | NOTE | 74 | ||
| windows-oldrel | NOTE | 57 | ||
| wasm-release | OK | 86 |
Exports:align_sequences
Dependencies:plot.matrix
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Sequence Alignment | align_sequences |
| Plot Alignment Matrix | plot.alignment |
| Print Alignments | print.alignment |
| Sequence Alignment Tool | SeqAlignR |
